Access Mascot Server
You can submit searches to this Mascot Server using the web browser search forms, below. This is ideal for interactive searches, where you are experimenting with the search parameters. For automated searches of batches of files, try Mascot Daemon. Links to install Mascot Daemon on a Windows PC can be found on the home page. You can also submit searches from Mascot Distiller and many instrument data systems and third party software applications.
Peptide Mass Fingerprint
The experimental data are a list of peptide mass values from the digestion of a protein by a specific enzyme such as trypsin.
One or more peptide mass values associated with information such as partial or ambiguous sequence strings, amino acid composition information, MS/MS fragment ion masses, etc. A super-set of a sequence tag query.
MS/MS Ions Search
Identification based on raw MS/MS data from one or more peptides.
Xcalibur RAW file
Search form defaults
Save your preferred default settings as a browser cookie.